Biomedical Informatics Research Center Antwerp

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Title DOI
https://doi.org/10.1146/annurev.genom.9.081307.164441 From Linkage Maps to Quantitative Trait Loci: The History and Science of the Utah Genetic Reference Project
https://doi.org/10.1111/nph.16315 How grass keeps growing: an integrated analysis of hormonal crosstalk in the maize leaf growth zone
https://doi.org/10.1261/rna.032821.112 Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6
https://doi.org/10.1213/ane.0000000000005976 Assessment of a Naloxone Coprescribing Alert for Patients at Risk of Opioid Overdose: A Quality Improvement Project
https://doi.org/10.1186/1471-2105-16-s3-a1 Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014
https://doi.org/10.3390/vaccines9030270 HLA-DRB1 Alleles Associated with Lower Leishmaniasis Susceptibility Share Common Amino Acid Polymorphisms and Epitope Binding Repertoires
https://doi.org/10.1021/acs.jproteome.2c00616 Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching
https://doi.org/10.1021/pr401274z jqcML: An Open-Source Java API for Mass Spectrometry Quality Control Data in the qcML Format
https://doi.org/10.1155/2010/362868 The Vascular Microenvironment and Systemic Sclerosis
https://doi.org/10.1136/jmedgenet-2020-107085 Delineation of a new fibrillin-2-opathy with evidence for a role of FBN2 in the pathogenesis of carpal tunnel syndrome
https://doi.org/10.1021/acs.jproteome.0c00977 CONSTANd: An Efficient Normalization Method for Relative Quantification in Small- and Large-Scale Omics Experiments in R BioConductor and Python
https://doi.org/10.3390/v14112517 Activation of Interferon-Stimulated Genes following Varicella-Zoster Virus Infection in a Human iPSC-Derived Neuronal In Vitro Model Depends on Exogenous Interferon-α
https://doi.org/10.12688/f1000research.10420.1 ISCB-Student Council Narratives: Strategical development of the ISCB-Regional Student Groups in 2016
https://doi.org/10.1186/s12969-022-00747-x Blood transcriptomics to facilitate diagnosis and stratification in pediatric rheumatic diseases – a proof of concept study
https://doi.org/10.1136/bmjophth-2020-000639 Interests and needs of eye care providers in clinical decision support for glaucoma
https://doi.org/10.1021/acs.jcim.4c01102 Semisupervised Learning to Boost hERG, Nav1.5, and Cav1.2 Cardiac Ion Channel Toxicity Prediction by Mining a Large Unlabeled Small Molecule Data Set
https://doi.org/10.1109/sensors52175.2022.9967271 A Joint Perception Scheme For Connected Vehicles
https://doi.org/10.3389/fimmu.2023.1177245 Lack of strong innate immune reactivity renders macrophages alone unable to control productive Varicella-Zoster Virus infection in an isogenic human iPSC-derived neuronal co-culture model
https://doi.org/10.1093/bjd/ljad439 Digital biobanks are underutilized in dermatology and create opportunities to reduce the burden of skin disease
https://doi.org/10.1007/s00277-024-05919-1 Analysis of Wilms’ tumor protein 1 specific TCR repertoire in AML patients uncovers higher diversity in patients in remission than in relapsed
https://doi.org/10.1093/infdis/jiad609 Unraveling the Immune Signature of Herpes Zoster: Insights Into the Pathophysiology and Human Leukocyte Antigen Risk Profile
https://doi.org/10.1126/sciadv.adr3196 T cell receptor–centric perspective to multimodal single-cell data analysis
https://doi.org/10.1016/j.diagmicrobio.2021.115613 Comparison of the QuantiFERON-TB® Gold Plus on LIAISON® XL and T-SPOT.TB for the diagnosis of latent Mycobacterium tuberculosis infection in a low tuberculosis incidence population
https://doi.org/10.1186/s12245-022-00472-y Audit of a computerized version of the Manchester triage system and a SIRS-based system for the detection of sepsis at triage in the emergency department
https://doi.org/10.1002/stvr.1865 Mutation testing optimisations using the Clang front‐end
https://doi.org/10.1177/20552076251337598 Continuous heart rate measurements in patients with cardiac disease: Device comparison and development of a novel artefact removal procedure
Consistent linkage of the long-QT syndrome to the Harvey ras-1 locus on chromosome 11.
Genetic linkage and heterogeneity in type I Charcot-Marie-Tooth disease (hereditary motor and sensory neuropathy type I).
https://doi.org/10.1146/annurev.biochem.69.1.343 Coupling of Open Reading Frames by Translational Bypassing
https://doi.org/10.1046/j.1365-2141.1998.00917.x Is there a link between African iron overload and the described mutations of the hereditary haemochromatosis gene?
https://doi.org/10.1016/s0021-9258(17)38419-3 Characterization of ribosomal frameshift events by protein sequence analysis.
https://doi.org/10.1073/pnas.83.7.2172 Isolation and characterization of Caenorhabditis elegans DNA sequences homologous to the v-abl oncogene.
A molecular variant of the APC gene at codon 1822: its association with diet, lifestyle, and risk of colon cancer.
Genetic structure of the Utah Mormons: comparison of results based on RFLPs, blood groups, migration matrices, isonymy, and pedigrees.
https://doi.org/10.1080/0032472031000143866 Smallpox and Its Eradication in Finland: Implications for Disease Control
Evaluating a medical error taxonomy.
https://doi.org/10.1212/01.wnl.0000234066.46806.90 Andreas Rett and benign familial neonatal convulsions revisited
https://doi.org/10.1016/j.jcjq.2017.06.005 Toward More Proactive Approaches to Safety in the Electronic Health Record Era
https://doi.org/10.1097/cmr.0000000000000258 Folate-conjugated immunoglobulin targets melanoma tumor cells for NK cell effector functions
https://doi.org/10.1196/annals.1407.020 Learning Regulatory Programs That Accurately Predict Differential Expression with MEDUSA
https://doi.org/10.1113/jphysiol.2008.166694 The evolutionarily conserved residue A653 plays a key role in HERG channel closing
https://doi.org/10.1016/j.taap.2019.114666 Untargeted liquid chromatography-mass spectrometry metabolomics to assess drug-induced cholestatic features in HepaRG® cells
https://doi.org/10.1097/sap.0000000000002268 Plastic Surgery Patient Expectations for Postoperative Opioid Prescriptions
https://doi.org/10.3390/cancers13071618 Covalent Cysteine Targeting of Bruton’s Tyrosine Kinase (BTK) Family by Withaferin-A Reduces Survival of Glucocorticoid-Resistant Multiple Myeloma MM1 Cells
https://doi.org/10.1586/14789450.2016.1172967 Designing biomedical proteomics experiments: state-of-the-art and future perspectives
https://doi.org/10.1186/s12967-019-2037-6 Diagnosing enterovirus meningitis via blood transcriptomics: an alternative for lumbar puncture?
https://doi.org/10.1007/s00251-016-0911-4 Immunological evasion of immediate-early varicella zoster virus proteins
https://doi.org/10.4161/cc.8.22.9992 Genetic manipulations reveal dynamic cell and gene functions: Cre-ating a new view of myogenesis
https://doi.org/10.1007/s00251-017-1047-x Increased herpes zoster risk associated with poor HLA-A immediate early 62 protein (IE62) affinity
https://doi.org/10.1213/ane.0000000000002732 Sources of Variation in Anesthetic Drug Costs
https://doi.org/10.1021/acs.jproteome.9b00072 QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments
https://doi.org/10.1186/1471-2407-14-594 The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein
https://doi.org/10.2174/1574893611308030006 On the Discovery of Cellular Subsystems in Gene Correlation Networks Using Measures of Centrality
https://doi.org/10.63317/5ngfzz8v9a2p A FrameNet for Cancer Information in Clinical Narratives: Schema and Annotation
https://doi.org/10.1021/acs.jproteome.9b00384 2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample
https://doi.org/10.1021/acs.analchem.9b02682 MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics
https://doi.org/10.1002/jms.4471 Visualizing the agreement of peptide assignments between different search engines
https://doi.org/10.1097/00115514-201205000-00012 Longitudinal Changes in the Operating Efficiency of Public Safety-Net Hospitals
https://doi.org/10.1242/dmm.001966 The first transgenic mice: an interview with Mario Capecchi
https://doi.org/10.1016/j.bbi.2024.11.037 Immune-based Machine learning Prediction of Diagnosis and Illness State in schizophrenia and bipolar Disorder: How data bias and overfitting were avoided
Localization of the genetic defect in familial adenomatous polyposis within a small region of chromosome 5.
Mapping of Alport syndrome to the long arm of the X chromosome.
https://doi.org/10.1128/mcb.5.1.59 Nonreciprocal exchanges of information between DNA duplexes coinjected into mammalian cell nuclei.
https://doi.org/10.1073/pnas.94.2.475 Ribonucleotide reductase in the archaeon Pyrococcus furiosus : A critical enzyme in the evolution of DNA genomes?
Etiological heterogeneity in X-linked spastic paraplegia.
Genetic heterogeneity among kindreds with Alport syndrome.
https://doi.org/10.1073/pnas.92.13.5997 Efficient induction of point mutations allowing recovery of specific locus mutations in zebrafish.
https://doi.org/10.1212/wnl.42.2.431 Linkage of atypical myotonia congenita to a sodium channel locus
https://doi.org/10.1159/000133124 Mapping of the MYC gene to band 8q24.12→q24.13 by R-banding and distal to fra(8)(q24.11), FRA8E, by fluorescence in situ hybridization
https://doi.org/10.1093/genetics/148.2.801 Genetic Analysis of Punt, a Type II Dpp Receptor That Functions Throughout the Drosophila melanogaster Life Cycle
https://doi.org/10.1097/00004872-199006002-00007 Multigenic human hypertension: evidence for subtypes and hope for haplotypes.
https://doi.org/10.1063/1.471350 Poling dynamics and investigation into the behavior of trapped charge in poled polymer films for nonlinear optical applications
https://doi.org/10.1164/rccm.200303-410oc Further Evidence for the Role of Genes on Chromosome 2 and Chromosome 5 in the Inheritance of Pulmonary Function
https://doi.org/10.1089/end.1999.13.329 Consecutive Experience with Four Dornier Lithotripters: HM4, MPL 9000, Compact, and U/50
https://doi.org/10.1063/1.1149586 Hyper-Rayleigh scattering using 1907 nm laser excitation
https://doi.org/10.1139/o95-121 Upstream stimulators for recoding
https://doi.org/10.1073/pnas.79.23.7127 Replacement of anticodon loop nucleotides to produce functional tRNAs: amber suppressors derived from yeast tRNAPhe.
https://doi.org/10.4049/jimmunol.157.12.5448 Localization to chromosome 22 of a gene encoding a human minor histocompatibility antigen
Opportunity for natural selection in the Utah Mormons.
https://doi.org/10.1016/j.vaccine.2008.11.109 A discrete computer model of the immune system reveals competitive interactions between the humoral and cellular branch and between cross-reacting memory and naïve responses
https://doi.org/10.1093/acprof:oso/9780195111668.003.0009 The role of Hox genes in hindbrain development
https://doi.org/10.1139/g89-183 Linkage maps of human chromosomes
https://doi.org/10.1097/pap.0b013e3180ca8a79 The Importance of Pathology Informatics in Translational Research
https://doi.org/10.1677/joe.1.05830 Studies of the neuromedin U-2 receptor gene in human obesity: evidence for the existence of two ancestral forms of the receptor
https://doi.org/10.1177/107327481101800307 Of Mice and Men: Opportunities to Use Genetically Engineered Mouse Models of Synovial Sarcoma for Preclinical Cancer Therapeutic Evaluation
Localization to chromosome 11 of a gene encoding a human minor histocompatibility antigen.
https://doi.org/10.1016/j.jprot.2013.12.013 The use of the isotopic distribution as a complementary quality metric to assess tandem mass spectra results
https://doi.org/10.1207/s15427633scc0501_4 Prioritized Spatial Updating in the Intrinsic Frame of Reference
https://doi.org/10.1007/978-3-642-32650-9_19 AcoSeeD: An Ant Colony Optimization for Finding Optimal Spaced Seeds in Biological Sequence Search
https://doi.org/10.1016/j.ejphar.2010.11.031 Cyclic AMP-dependent down regulation of ecto-nucleotide pyrophosphatase/phosphodiesterase 1 (NPP1) in rat C6 glioma
https://doi.org/10.1097/mlr.0b013e31829b1de1 Knowledge Management and Informatics Considerations for Comparative Effectiveness Research
https://doi.org/10.1016/j.euprot.2014.05.002 Towards automated discrimination of lipids versus peptides from full scan mass spectra
https://doi.org/10.1021/pr401269z Efficient Reduction of Candidate Matches in Peptide Spectrum Library Searching Using the Top k Most Intense Peaks
https://doi.org/10.3233/978-1-60750-949-3-992 An Information Flow Analysis of a Distributed Information System for Space Medical Support
https://doi.org/10.12688/f1000research.12321.1 Second ISCB Latin American Student Council Symposium (LA-SCS) 2016
https://doi.org/10.1145/2500863.2500871 Mining spatially cohesive itemsets in protein molecular structures
https://doi.org/10.3233/978-1-61499-574-6-93 Enhancing Patient Safety Event Reporting by K-nearest Neighbor Classifier
https://doi.org/10.3390/biomedicines10081772 Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity: Implications of Seizure-like Neuronal Hyperexcitability Followed by Tauopathy
https://doi.org/10.1183/09031936.98.12051177 Factor V Leiden is not common in patients diagnosed with primary pulmonary hypertension
https://doi.org/10.4137/bbi.s38419 Practical Approaches for Mining Frequent Patterns in Molecular Datasets