ProDigest (Belgium)

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Title DOI
https://doi.org/10.1093/femsre/fuaa060 The impact of the Fungus-Host-Microbiota interplay uponCandida albicansinfections: current knowledge and new perspectives
https://doi.org/10.1080/10408398.2017.1421900 Can dynamicin vitrodigestion systems mimic the physiological reality?
https://doi.org/10.1186/1471-2180-14-133 The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro
https://doi.org/10.1007/978-3-319-16104-4_27 The Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)
https://doi.org/10.3390/nu12092808 Effects of Human Milk Oligosaccharides on the Adult Gut Microbiota and Barrier Function
https://doi.org/10.3390/nu11071464 The Intestinal Fate of Citrus Flavanones and Their Effects on Gastrointestinal Health
https://doi.org/10.1016/j.ijpharm.2018.11.020 A four-strain probiotic exerts positive immunomodulatory effects by enhancing colonic butyrate production in vitro
https://doi.org/10.1021/acs.jafc.7b02049 Gastrointestinal Simulation Model TWIN-SHIME Shows Differences between Human Urolithin-Metabotypes in Gut Microbiota Composition, Pomegranate Polyphenol Metabolism, and Transport along the Intestinal Tract
https://doi.org/10.1093/femsec/fiac038 The impact of environmental pH on the gut microbiota community structure and short chain fatty acid production
https://doi.org/10.1007/s00418-017-1539-7 T84 monolayers are superior to Caco-2 as a model system of colonocytes
https://doi.org/10.1016/j.jff.2015.11.005 Arabinogalactan and fructooligosaccharides improve the gut barrier function in distinct areas of the colon in the Simulator of the Human Intestinal Microbial Ecosystem
https://doi.org/10.1021/acs.jafc.7b04611 Arabinoxylo-Oligosaccharides and Inulin Impact Inter-Individual Variation on Microbial Metabolism and Composition, Which Immunomodulates Human Cells
https://doi.org/10.1016/j.ijpx.2019.100021 A synbiotic concept containing spore-forming Bacillus strains and a prebiotic fiber blend consistently enhanced metabolic activity by modulation of the gut microbiome in vitro
https://doi.org/10.1016/j.ijpharm.2020.119648 A 4-strain probiotic supplement influences gut microbiota composition and gut wall function in patients with ulcerative colitis
https://doi.org/10.3390/nu12071917 A Novel Non-Digestible, Carrot-Derived Polysaccharide (cRG-I) Selectively Modulates the Human Gut Microbiota while Promoting Gut Barrier Integrity: An Integrated In Vitro Approach
https://doi.org/10.3390/microorganisms8071028 Bacillus subtilis HU58 and Bacillus coagulans SC208 Probiotics Reduced the Effects of Antibiotic-Induced Gut Microbiome Dysbiosis in an M-SHIME® Model
https://doi.org/10.3390/microorganisms10040762 The Effect of Amino Acids on Production of SCFA and bCFA by Members of the Porcine Colonic Microbiota
https://doi.org/10.1371/journal.pone.0197692 Establishing a mucosal gut microbial community in vitro using an artificial simulator
https://doi.org/10.3390/nu14122546 Human Milk Oligosaccharides and Lactose Differentially Affect Infant Gut Microbiota and Intestinal Barrier In Vitro
https://doi.org/10.3390/nu13030726 A Comparison of the In Vitro Effects of 2’Fucosyllactose and Lactose on the Composition and Activity of Gut Microbiota from Infants and Toddlers
https://doi.org/10.1016/j.ijpx.2021.100087 Influence of probiotic bacteria on gut microbiota composition and gut wall function in an in-vitro model in patients with Parkinson's disease
https://doi.org/10.1093/jas/skaa173 Dried yeast cell walls high in beta-glucan and mannan-oligosaccharides positively affect microbial composition and activity in the canine gastrointestinal tract in vitro
https://doi.org/10.3389/fnut.2021.700571 Comparative Effect of 22 Dietary Sources of Fiber on Gut Microbiota of Healthy Humans in vitro
https://doi.org/10.3390/nu13041125 Antioxidant Vitamins and Prebiotic FOS and XOS Differentially Shift Microbiota Composition and Function and Improve Intestinal Epithelial Barrier In Vitro
https://doi.org/10.1007/s00394-021-02654-5 A randomized, placebo-controlled trial investigating the acute and chronic benefits of American Ginseng (Cereboost®) on mood and cognition in healthy young adults, including in vitro investigation of gut microbiota changes as a possible mechanism of action
https://doi.org/10.3390/nu13113897 Water Kefir and Derived Pasteurized Beverages Modulate Gut Microbiota, Intestinal Permeability and Cytokine Production In Vitro
https://doi.org/10.1038/s41596-021-00580-8 Rapid ex vivo molecular fingerprinting of biofluids using laser-assisted rapid evaporative ionization mass spectrometry
https://doi.org/10.3390/microorganisms9102142 Consistent Prebiotic Effects of Carrot RG-I on the Gut Microbiota of Four Human Adult Donors in the SHIME® Model despite Baseline Individual Variability
https://doi.org/10.1016/j.jconrel.2024.04.016 The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome
https://doi.org/10.1016/j.phymed.2023.154996 Possible role of the gut microbiome in mediating the beneficial effects of the six-herbal formulation STW 5-II on digestive health
https://doi.org/10.3389/fmicb.2022.1054061 Development of a reproducible small intestinal microbiota model and its integration into the SHIME®-system, a dynamic in vitro gut model
https://doi.org/10.3390/nu16162791 Survival of Probiotic Bacterial Cells in the Upper Gastrointestinal Tract and the Effect of the Surviving Population on the Colonic Microbial Community Activity and Composition
https://doi.org/10.3389/fmicb.2024.1358456 Saccharomyces cerevisiae derived postbiotic alters gut microbiome metabolism in the human distal colon resulting in immunomodulatory potential in vitro
https://doi.org/10.1007/s11130-023-01043-z Age-Dependent Prebiotic Effects of Soluble Corn Fiber in M-SHIME® Gut Microbial Ecosystems
https://doi.org/10.1016/j.jconrel.2024.03.039 Poly(D,l-lactide-co-glycolide) particles are metabolised by the gut microbiome and elevate short chain fatty acids
https://doi.org/10.1016/j.foodhyd.2024.110036 Structure dependent fermentation kinetics of dietary carrot rhamnogalacturonan-I in an in vitro gut model
https://doi.org/10.1128/aem.01880-22 Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics
https://doi.org/10.3390/nutraceuticals3040035 The Novel Synbiotic, AG1®, Increases Short-Chained Fatty Acid Production in the Simulator of Human Intestinal Microbial Ecosystem (SHIME) Model®
https://doi.org/10.3390/nu16111570 Co-Supplementation of Baobab Fiber and Arabic Gum Synergistically Modulates the In Vitro Human Gut Microbiome Revealing Complementary and Promising Prebiotic Properties
https://doi.org/10.1371/journal.pone.0322877 In vitro fermentation of yeast cell walls (mannan-oligosaccharide) and purified β-glucans modulates the colonic microbiota of dogs with inflammatory bowel disease and demonstrates protective effects on barrier integrity and anti-inflammatory properties
https://doi.org/10.1016/j.foodres.2025.116098 In vitro human gastrointestinal digestibility and colonic fermentation of edible yeast-based protein: A comparative study with whey and casein
https://doi.org/10.1093/jas/skaf056 A specific blend of prebiotics and postbiotics improved the gut microbiome of dogs with soft stools in the in vitro Simulator of the Canine Intestinal Microbial Ecosystem
https://doi.org/10.1016/j.erss.2025.104176 Addressing the gaps in understanding and assessing energy communities
https://doi.org/10.1002/mds.70047 Effects of a Four‐Strain Probiotic on Gut Microbiota, Inflammation, and Symptoms in Parkinson's Disease: A Randomized Clinical Trial
https://doi.org/10.1007/s12603-014-0480-x Twelve-month consumption of a polyphenol extract from olive (Olea europaea) in a double blind, randomized trial increases serum total osteocalcin levels and improves serum lipid profiles in postmenopausal women with osteopenia
https://doi.org/10.1111/1758-2229.12056 Arabinogalactan and fructo‐oligosaccharides have a different fermentation profile in the S imulator of the H uman I ntestinal M icrobial E cosystem ( SHIME ® )
https://doi.org/10.3945/jn.114.201772 Arabinoxylan in Wheat Is More Responsible Than Cellulose for Promoting Intestinal Barrier Function in Weaned Male Piglets
https://doi.org/10.1016/j.ijfoodmicro.2010.02.030 In vitro modulation of the human gastrointestinal microbial community by plant-derived polysaccharide-rich dietary supplements
https://doi.org/10.1080/07315724.2016.1257961 New Frontiers in Fibers: Innovative and Emerging Research on the Gut Microbiome and Bone Health
https://doi.org/10.1002/mnfr.201800607 Aronia (Aronia melanocarpa) Polyphenols Modulate the Microbial Community in a Simulator of the Human Intestinal Microbial Ecosystem (SHIME) and Decrease Secretion of Proinflammatory Markers in a Caco‐2/endothelial Cell Coculture Model
https://doi.org/10.1021/jf402137r A Dried Yeast Fermentate Selectively Modulates both the Luminal and Mucosal Gut Microbiota and Protects against Inflammation, As Studied in an Integrated in Vitro Approach
https://doi.org/10.1016/j.jff.2017.09.008 Aronia ( Aronia melanocarpa ) phenolics bioavailability in a combined in vitro digestion/Caco-2 cell model is structure and colon region dependent
https://doi.org/10.1016/j.jff.2019.103484 2′-Fucosyllactose alters the composition and activity of gut microbiota from formula-fed infants receiving complementary feeding in a validated intestinal model
https://doi.org/10.1016/j.jchromb.2019.06.013 Development of an analytical method to detect short-chain fatty acids by SPME-GC–MS in samples coming from an in vitro gastrointestinal model
https://doi.org/10.1021/acs.jafc.9b05912 Fate and Bioaccessibility of Iodine in Food Prepared from Agronomically Biofortified Wheat and Rice and Impact of Cofertilization with Zinc and Selenium
https://doi.org/10.1038/npjbiofilms.2016.16 Arabinoxylans, inulin and Lactobacillus reuteri 1063 repress the adherent-invasive Escherichia coli from mucus in a mucosa-comprising gut model
https://doi.org/10.1021/acsomega.8b01360 Different Oat Ingredients Stimulate Specific Microbial Metabolites in the Gut Microbiome of Three Human Individuals in Vitro
https://doi.org/10.1186/s12906-017-1948-0 A yeast fermentate improves gastrointestinal discomfort and constipation by modulation of the gut microbiome: results from a randomized double-blind placebo-controlled pilot trial
https://doi.org/10.1016/j.foodres.2021.110676 Treatment with a spore-based probiotic containing five strains of Bacillus induced changes in the metabolic activity and community composition of the gut microbiota in a SHIME® model of the human gastrointestinal system
https://doi.org/10.1016/j.jff.2017.01.030 Fate of chitin-glucan in the human gastrointestinal tract as studied in a dynamic gut simulator (SHIME®)
https://doi.org/10.1016/j.foodres.2017.06.002 Quantification of egg ovalbumin hydrolysate-derived anti-hypertensive peptides in an in vitro model combining luminal digestion with intestinal Caco-2 cell transport
https://doi.org/10.3389/fnut.2020.608495 Comparison of the Bifidogenic Effects of Goat and Cow Milk-Based Infant Formulas to Human Breast Milk in an in vitro Gut Model for 3-Month-Old Infants
https://doi.org/10.1016/j.jff.2018.05.053 A combination of xylooligosaccharides and a polyphenol blend affect microbial composition and activity in the distal colon exerting immunomodulating properties on human cells
https://doi.org/10.1039/c7fo00839b Egg-derived bioactive peptides with ACE-inhibitory properties: a literature update
https://doi.org/10.3390/nu13030963 Development of an Affordable, Sustainable and Efficacious Plant-Based Immunomodulatory Food Ingredient Based on Bell Pepper or Carrot RG-I Pectic Polysaccharides
https://doi.org/10.1093/jas/skz357 Development and validation of the Simulator of the Canine Intestinal Microbial Ecosystem (SCIME)1
https://doi.org/10.1021/acs.jafc.9b05085 Yeast-Derived Formulations Are Differentially Fermented by the Canine and Feline Microbiome As Assessed in a Novel In Vitro Colonic Fermentation Model
https://doi.org/10.3920/bm2019.0064 Lactobacillus rhamnosus GG and Saccharomyces cerevisiae boulardii exert synergistic antipathogenic activity in vitro against enterotoxigenic Escherichia coli
https://doi.org/10.1152/ajpendo.00108.2020 Comparison of the effects of soluble corn fiber and fructooligosaccharides on metabolism, inflammation, and gut microbiome of high-fat diet-fed mice
https://doi.org/10.3390/nu12061552 In Vitro Evaluation of Prebiotic Properties of a Commercial Artichoke Inflorescence Extract Revealed Bifidogenic Effects
https://doi.org/10.1128/aem.02647-20 Mucin as a Functional Niche Is a More Important Driver of In Vitro Gut Microbiota Composition and Functionality than Akkermansia muciniphila Supplementation
https://doi.org/10.3920/bm2020.0180 Lacticaseibacillus rhamnosus GG and Saccharomyces cerevisiae boulardii supplementation exert protective effects on human gut microbiome following antibiotic administration in vitro
https://doi.org/10.3390/nu12082268 Synbiotic Effect of Bifidobacterium lactis CNCM I-3446 and Bovine Milk-Derived Oligosaccharides on Infant Gut Microbiota
https://doi.org/10.1002/mnfr.201700881 A Critical Evaluation of In Vitro Hesperidin 2S Bioavailability in a Model Combining Luminal (Microbial) Digestion and Caco‐2 Cell Absorption in Comparison to a Randomized Controlled Human Trial
https://doi.org/10.4315/0362-028x.jfp-18-587 A Bacteriophage Cocktail Eliminates Salmonella Typhimurium from the Human Colonic Microbiome while Preserving Cytokine Signaling and Preventing Attachment to and Invasion of Human Cells by Salmonella In Vitro
https://doi.org/10.3390/microorganisms9091981 A Pectin-Rich, Baobab Fruit Pulp Powder Exerts Prebiotic Potential on the Human Gut Microbiome In Vitro
https://doi.org/10.3390/nu13082683 Adjuvant Effect of Orally Applied Preparations Containing Non-Digestible Polysaccharides on Influenza Vaccination in Healthy Seniors: A Double-Blind, Randomised, Controlled Pilot Trial
https://doi.org/10.3390/nu13093249 Chitin Glucan Shifts Luminal and Mucosal Microbial Communities, Improve Epithelial Barrier and Modulates Cytokine Production In Vitro
https://doi.org/10.1021/acs.jafc.9b05202 Metabolic Analysis of Regionally Distinct Gut Microbial Communities Using an In Vitro Platform
https://doi.org/10.1016/j.mimet.2019.105735 Baby-SPIME: A dynamic in vitro piglet model mimicking gut microbiota during the weaning process
https://doi.org/10.1002/uog.22099 Screening for COVID‐19 at childbirth: is it effective?
https://doi.org/10.1016/j.ijpharm.2021.120977 Comparison of protection and release behavior of different capsule polymer combinations based on L. acidophilus survivability and function and caffeine release
https://doi.org/10.1128/spectrum.03933-22 Clostridium scindens secretome suppresses virulence gene expression of Clostridioides difficile in a bile acid-independent manner
https://doi.org/10.1186/s13568-020-01015-5 Exploration of isoxanthohumol bioconversion from spent hops into 8-prenylnaringenin using resting cells of Eubacterium limosum
https://doi.org/10.3390/nu15194229 Ex Vivo Colonic Fermentation of NUTRIOSE® Exerts Immuno-Modulatory Properties and Strong Anti-Inflammatory Effects
https://doi.org/10.1007/s13679-016-0196-9 Satiety Innovations: Food Products to Assist Consumers with Weight Loss, Evidence on the Role of Satiety in Healthy Eating: Overview and In Vitro Approximation
https://doi.org/10.3390/biotech11020014 A Freeze-Dried Cranberry Powder Consistently Enhances SCFA Production and Lowers Abundance of Opportunistic Pathogens In Vitro
https://doi.org/10.2217/fmb-2022-0066 Effects of Combined Prebiotic, Probiotic, IgG and Amino Acid Supplementation on the Gut Microbiome Of Patients With Inflammatory Bowel Disease
https://doi.org/10.1016/j.ijpharm.2022.122441 In vitro evaluation of the gastrointestinal delivery of acid-sensitive pancrelipase in a next generation enteric capsule using an exocrine pancreatic insufficiency disease model
https://doi.org/10.3390/applmicrobiol3010008 Galactooligosaccharide (GOS) Reduces Branched Short-Chain Fatty Acids, Ammonium, and pH in a Short-Term Colonic Fermentation Model
https://doi.org/10.1016/j.gastha.2022.10.011 In Vitro Efficacy of Targeted Fermentable Oligosaccharides, Disaccharides, Monosaccharides, and Polyols Enzymatic Digestion in a High-Fidelity Simulated Gastrointestinal Environment
https://doi.org/10.3390/microorganisms12071263 AG1®, a Novel Synbiotic, Maintains Gut Barrier Function following Inflammatory Challenge in a Caco-2/THP1-Blue™ Co-Culture Model
https://doi.org/10.3390/md23060242 Undaria pinnatifida Fucoidan Enhances Gut Microbiome, Butyrate Production, and Exerts Anti-Inflammatory Effects in an In Vitro Short-Term SHIME® Coupled to a Caco-2/THP-1 Co-Culture Model
https://doi.org/10.11648/j.ijnfs.20190801.12 Lactulose Crystals Beneficially Affect Community Composition Along Entire Human Colon in Vitro, Resulting in Donor-Dependent Prebiotic Effects at Metabolic Level
https://doi.org/10.3390/applbiosci2040041 AG1®, a Novel Synbiotic, Demonstrates Superior Mineral Bioaccessibility and Bioavailability Compared to a Tablet Multivitamin and Mineral Supplement Using an In Vitro Model of the Upper Gastrointestinal Tract
https://doi.org/10.1038/s41522-025-00803-w Candida albicans colonization in the human colon correlates with a reduction in acetate- and butyrate-producing bacteria, as simulated using the M-SHIME® model
https://doi.org/10.3390/ani13182812 Amino Acid Digestibility of Different Formulations of Torula Yeast in an In Vitro Porcine Gastrointestinal Digestion Model and Their Protective Effects on Barrier Function and Inflammation in a Caco-2/THP1Co-Culture Model
https://doi.org/10.3390/microorganisms13030613 Effects of NatureKnit™, a Blend of Fruit and Vegetable Fibers Rich in Naturally Occurring Bound Polyphenols, on the Metabolic Activity and Community Composition of the Human Gut Microbiome Using the M-SHIME® Gastrointestinal Model
https://doi.org/10.3389/fnut.2025.1712993 Tributyrin (CoreBiome®) enhances butyrate levels and modulates the gut microbiota, barrier function, and immune response in vitro
https://doi.org/10.1016/j.lwt.2014.08.040 A novel hypromellose capsule, with acid resistance properties, permits the targeted delivery of acid-sensitive products to the intestine